| name | value |
|---|---|
| pathology_review_3 | 80 |
| progression_free_survival_months | 48 |
| ethnicity | 39 |
| smoking_history_pack_years | 30 |
| radiation_yes_no | 16 |
| chemotherapy_yes_no | 12 |
| normal | 9 |
| stage_t | 9 |
| stage_n | 9 |
| stage_m | 9 |
| chemotherapy_neo_adjuvant_yes_no | 5 |
| status_at_time_of_last_follow_up | 4 |
| overall_survival_months | 4 |
| smoking_status | 3 |
| stage_uicc | 2 |
Small Cell Lung Cancer
El Mehdi Baknine, s194533
Jakob Frostholm Højgaard, s194527
Jonathan Dragestad Møller, s184243
Mikkel Niklas Rasmussen, s193518
Thomas Malthe Mølgaard Tams, s204540
2023-11-28
Paper and data source
Title: Comprehensive genomic profiles of small cell lung cancer, George J. et. al. (2015)
Purpose: Identify different small cell lung cancer profiles
Data set overview
Loading
Dimensions: 81, 31669
30 metadata
31639 gene expression
Cleaning
New dimensions: 81, 31669
Check for duplicates in SampleIDs
Clean weird variables
Check NAs
Found NAs
Augmenting
New dimensions: 81, 433
Added variables
| survival_time | survival_status | treatment_group |
|---|---|---|
| Good | 0 | Chemo and Radiation |
| Decent | 0 | Chemo Only |
| Good | 0 | Chemo and Radiation |
| Decent | 0 | Data Missing |
| Decent | 0 | Chemo and Radiation |
| Decent | 0 | Chemo and Radiation |
| Great | 0 | Chemo and Radiation |
| Decent | 0 | Chemo and Radiation |
| Good | 1 | Chemo and Radiation |
| Great | 1 | Chemo and Radiation |
| Good | 1 | Chemo and Radiation |
| Bad | 0 | Chemo Only |
| Great | 0 | Chemo and Radiation |
| Great | 1 | Data Missing |
| Great | 0 | Chemo Only |
| Decent | 0 | Chemo Only |
| Decent | 0 | No treatment |
| Decent | 0 | No treatment |
| NA | NA | Chemo and Radiation |
| Decent | 0 | Chemo and Radiation |
| NA | NA | Data Missing |
| Great | 1 | Chemo and Radiation |
| Terrible | 1 | Chemo and Radiation |
| Bad | 0 | Chemo Only |
| Good | 1 | No treatment |
| NA | NA | Data Missing |
| NA | NA | Data Missing |
| Decent | 0 | Chemo Only |
| Terrible | 1 | Data Missing |
| Decent | 0 | Chemo Only |
| Bad | 0 | Chemo and Radiation |
| Terrible | 0 | Radiation Only |
| Decent | 0 | Chemo and Radiation |
| Good | 0 | No treatment |
| Bad | 0 | Data Missing |
| Decent | 0 | Chemo and Radiation |
| Decent | 1 | All Treatments |
| Good | 1 | Data Missing |
| Decent | 0 | Chemo and Radiation |
| Terrible | 0 | Chemo and Radiation |
| Decent | 0 | Other Combinations |
| Decent | 1 | Chemo and Radiation |
| Terrible | 0 | No treatment |
| Terrible | 0 | No treatment |
| Terrible | 0 | No treatment |
| Great | 1 | Data Missing |
| Bad | 0 | Chemo and Radiation |
| Decent | 1 | Chemo and Radiation |
| Decent | 0 | Data Missing |
| Good | 1 | Chemo and Radiation |
| Bad | 0 | No treatment |
| Decent | 0 | Data Missing |
| Decent | 0 | Data Missing |
| Decent | 0 | Chemo and Radiation |
| Decent | 0 | Data Missing |
| Decent | 0 | Data Missing |
| Great | 1 | Chemo and Radiation |
| Good | 0 | Chemo and Radiation |
| Good | 1 | Chemo and Radiation |
| Decent | 0 | Data Missing |
| Terrible | 0 | Data Missing |
| Bad | 0 | Data Missing |
| Good | 0 | Chemo and Radiation |
| Great | 1 | Chemo and Radiation |
| Terrible | 0 | Data Missing |
| Great | 1 | Chemo and Radiation |
| Decent | 1 | Chemo and Radiation |
| Decent | 1 | Chemo and Radiation |
| Great | 1 | No treatment |
| Great | 1 | Chemo Only |
| Decent | 0 | No treatment |
| Great | 1 | No treatment |
| Bad | 0 | No treatment |
| Good | 0 | Chemo Only |
| Great | 1 | No treatment |
| Decent | 1 | No treatment |
| Decent | 1 | Chemo and Radiation |
| Decent | 1 | No treatment |
| Decent | 1 | Chemo and Radiation |
| Decent | 0 | Chemo and Radiation |
| Terrible | 1 | Other Combinations |
Methods
submethod
K-means Hierchichal clustring t-test : N0 : There is no significant difference between clusters. To get low-high expression signature
Results
Executable Code
Plot1
Some exploratory data analysis
Conclusion
